Detailed information of SNP:
|
SNP ID:
sf0703672199(Gbrowse)
Chromosome: chr07 Position: 3672199 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1297 | 83.58% | 16.42% |
| All Indica | 728 | 71.15% | 28.85% |
| All Japonica | 453 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 340 | 59.71% | 40.29% |
| Indica II | 194 | 93.81% | 6.19% |
| Indica Intermediate | 194 | 68.56% | 31.44% |
| Temperate Japonica | 302 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703672199 | A->G | INTERGENIC | None |