Detailed information of SNP:
|
SNP ID:
sf0703688999(Gbrowse)
Chromosome: chr07 Position: 3688999 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.46% | 7.54% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703688999 | T->A | INTERGENIC | None |