Detailed information of SNP:
|
SNP ID:
sf0703702406(Gbrowse)
Chromosome: chr07 Position: 3702406 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 97.39% | 2.61% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703702406 | A->T | LOC_Os07g07420(LOC_Os07g07420.1) | INTRON |