Detailed information of SNP:
|
SNP ID:
sf0703792592(Gbrowse)
Chromosome: chr07 Position: 3792592 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.70% | 15.30% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703792592 | C->G | INTERGENIC | None |