Detailed information of SNP:
|
SNP ID:
sf0703854510(Gbrowse)
Chromosome: chr07 Position: 3854510 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 66.67% | 33.33% |
| All Indica | 792 | 67.55% | 32.45% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 370 | 69.46% | 30.54% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 209 | 66.99% | 33.01% |
| Temperate Japonica | 335 | 59.10% | 40.90% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703854510 | C->T | INTERGENIC | None |