Detailed information of SNP:
|
SNP ID:
sf0703878154(Gbrowse)
Chromosome: chr07 Position: 3878154 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 93.17% | 6.83% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 455 | 80.66% | 19.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 76.49% | 23.51% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 62 | 83.87% | 16.13% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703878154 | C->G | INTERGENIC | None |