Detailed information of SNP:
|
SNP ID:
sf0703937540(Gbrowse)
Chromosome: chr07 Position: 3937540 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 64.42% | 35.58% |
| All Indica | 769 | 84.79% | 15.21% |
| All Japonica | 486 | 30.86% | 69.14% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 357 | 88.24% | 11.76% |
| Indica II | 204 | 84.80% | 15.20% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 329 | 37.08% | 62.92% |
| Tropical Japonica | 91 | 15.38% | 84.62% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703937540 | T->C | INTERGENIC | None |