Detailed information of SNP:
|
SNP ID:
sf0703939622(Gbrowse)
Chromosome: chr07 Position: 3939622 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 96.21% | 3.79% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 480 | 93.54% | 6.46% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 320 | 90.62% | 9.38% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703939622 | G->C | INTERGENIC | None |