Detailed information of SNP:
|
SNP ID:
sf0703977232(Gbrowse)
Chromosome: chr07 Position: 3977232 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 88.06% | 11.94% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 80.73% | 19.27% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703977232 | A->G | INTERGENIC | None |