Detailed information of SNP:
|
SNP ID:
sf0704018476(Gbrowse)
Chromosome: chr07 Position: 4018476 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 90.00% | 10.00% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 489 | 76.69% | 23.31% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 62 | 66.13% | 33.87% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704018476 | A->G | INTERGENIC | None |