Detailed information of SNP:
|
SNP ID:
sf0704141366(Gbrowse)
Chromosome: chr07 Position: 4141366 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 58.19% | 41.81% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 35 | 48.57% | 51.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704141366 | T->C | LOC_Os07g08140(LOC_Os07g08140.1) | UTR_3_PRIME |