Detailed information of SNP:
|
SNP ID:
sf0704179142(Gbrowse)
Chromosome: chr07 Position: 4179142 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 56.93% | 43.07% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 495 | 4.85% | 95.15% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 333 | 6.01% | 93.99% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704179142 | A->T | LOC_Os07g08190(LOC_Os07g08190.1) | INTRON |