Detailed information of SNP:
|
SNP ID:
sf0704233687(Gbrowse)
Chromosome: chr07 Position: 4233687 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.37% | 45.63% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704233687 | C->T | INTERGENIC | None |