Detailed information of SNP:
|
SNP ID:
sf0704256454(Gbrowse)
Chromosome: chr07 Position: 4256454 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.26% | 47.74% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704256454 | A->G | LOC_Os07g08320(LOC_Os07g08320.1) | INTRON |