Detailed information of SNP:
|
SNP ID:
sf0704290673(Gbrowse)
Chromosome: chr07 Position: 4290673 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.59% | 48.41% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704290673 | A->G | INTERGENIC | None |