Detailed information of SNP:
|
SNP ID:
sf0704307853(Gbrowse)
Chromosome: chr07 Position: 4307853 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.93% | 44.07% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704307853 | C->T | INTERGENIC | None |