Detailed information of SNP:
|
SNP ID:
sf0704343210(Gbrowse)
Chromosome: chr07 Position: 4343210 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.35% | 43.65% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704343210 | T->C | INTERGENIC | None |