Detailed information of SNP:
|
SNP ID:
sf0704370634(Gbrowse)
Chromosome: chr07 Position: 4370634 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 99.00% | 1.00% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 479 | 97.49% | 2.51% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 99.37% | 0.63% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704370634 | C->T | INTERGENIC | None |