Detailed information of SNP:
|
SNP ID:
sf0704372500(Gbrowse)
Chromosome: chr07 Position: 4372500 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.21% | 43.79% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704372500 | G->T | INTERGENIC | None |