Detailed information of SNP:
|
SNP ID:
sf0704380583(Gbrowse)
Chromosome: chr07 Position: 4380583 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 97.67% | 2.33% |
| All Indica | 756 | 95.90% | 4.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 95.43% | 4.57% |
| Indica II | 206 | 99.51% | 0.49% |
| Indica Intermediate | 200 | 93.00% | 7.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704380583 | C->G | INTERGENIC | None |