Detailed information of SNP:
|
SNP ID:
sf0704461911(Gbrowse)
Chromosome: chr07 Position: 4461911 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1248 | 82.45% | 17.55% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 345 | 42.90% | 57.10% |
| Aus | 57 | 91.23% | 8.77% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 224 | 39.29% | 60.71% |
| Tropical Japonica | 72 | 45.83% | 54.17% |
| Japonica Intermediate | 49 | 55.10% | 44.90% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704461911 | G->A | INTERGENIC | None |