Detailed information of SNP:
|
SNP ID:
sf0704471425(Gbrowse)
Chromosome: chr07 Position: 4471425 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.81% | 46.19% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704471425 | A->C | LOC_Os07g08680(LOC_Os07g08680.1) | INTRON |