Detailed information of SNP:
|
SNP ID:
sf0704518294(Gbrowse)
Chromosome: chr07 Position: 4518294 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 53.18% | 46.82% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704518294 | A->G | INTERGENIC | None |