Detailed information of SNP:
|
SNP ID:
sf0704599544(Gbrowse)
Chromosome: chr07 Position: 4599544 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 84.03% | 15.97% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 496 | 65.32% | 34.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 334 | 50.00% | 50.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704599544 | C->A | INTERGENIC | None |