Detailed information of SNP:
|
SNP ID:
sf0704602368(Gbrowse)
Chromosome: chr07 Position: 4602368 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 82.01% | 17.99% |
| All Indica | 796 | 89.20% | 10.80% |
| All Japonica | 493 | 66.33% | 33.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 332 | 51.20% | 48.80% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704602368 | T->C | INTERGENIC | None |