Detailed information of SNP:



SNP ID: sf0704623676(Gbrowse)

Chromosome: chr07

Position: 4623676
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 58.04% 41.96%
All Indica798 98.75% 1.25%
All Japonica497 0.60% 99.40%
Aus67 16.42% 83.58%
Indica I375 99.73% 0.27%
Indica II212 96.70% 3.30%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0704623676 T->C INTERGENIC None