Detailed information of SNP:
|
SNP ID:
sf0704630042(Gbrowse)
Chromosome: chr07 Position: 4630042 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 53.62% | 46.38% |
| All Indica | 778 | 19.79% | 80.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 366 | 22.95% | 77.05% |
| Indica II | 204 | 17.16% | 82.84% |
| Indica Intermediate | 208 | 16.83% | 83.17% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704630042 | T->A | INTERGENIC | None |