Detailed information of SNP:
|
SNP ID:
sf0704633434(Gbrowse)
Chromosome: chr07 Position: 4633434 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 74.54% | 25.46% |
| All Indica | 783 | 88.12% | 11.88% |
| All Japonica | 496 | 64.92% | 35.08% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 366 | 84.97% | 15.03% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 63.47% | 36.53% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704633434 | A->G | LOC_Os07g08910(LOC_Os07g08910.1) | INTRON |