Detailed information of SNP:
|
SNP ID:
sf0704634311(Gbrowse)
Chromosome: chr07 Position: 4634311 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1229 | 61.51% | 38.49% |
| All Indica | 618 | 66.99% | 33.01% |
| All Japonica | 495 | 64.24% | 35.76% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 287 | 60.28% | 39.72% |
| Indica II | 168 | 70.83% | 29.17% |
| Indica Intermediate | 163 | 74.85% | 25.15% |
| Temperate Japonica | 333 | 63.36% | 36.64% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 36 | 47.22% | 52.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704634311 | T->C | INTERGENIC | None |