Detailed information of SNP:
|
SNP ID:
sf0704637071(Gbrowse)
Chromosome: chr07 Position: 4637071 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1336 | 67.51% | 32.49% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 427 | 20.37% | 79.63% |
| Aus | 60 | 18.33% | 81.67% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 284 | 22.89% | 77.11% |
| Tropical Japonica | 83 | 12.05% | 87.95% |
| Japonica Intermediate | 60 | 20.00% | 80.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704637071 | A->G | INTERGENIC | None |