Detailed information of SNP:
|
SNP ID:
sf0704765591(Gbrowse)
Chromosome: chr07 Position: 4765591 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 84.70% | 15.30% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 474 | 71.31% | 28.69% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 86.24% | 13.76% |
| Tropical Japonica | 85 | 15.29% | 84.71% |
| Japonica Intermediate | 62 | 69.35% | 30.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704765591 | C->T | INTERGENIC | None |