Detailed information of SNP:
|
SNP ID:
sf0704767025(Gbrowse)
Chromosome: chr07 Position: 4767025 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 66.53% | 33.47% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 494 | 31.17% | 68.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 333 | 15.02% | 84.98% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704767025 | G->A | INTERGENIC | None |