Detailed information of SNP:
|
SNP ID:
sf0704777807(Gbrowse)
Chromosome: chr07 Position: 4777807 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 52.54% | 47.46% |
| All Indica | 778 | 17.87% | 82.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 367 | 15.26% | 84.74% |
| Indica II | 207 | 20.29% | 79.71% |
| Indica Intermediate | 204 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704777807 | C->T | INTERGENIC | None |