Detailed information of SNP:
|
SNP ID:
sf0704802344(Gbrowse)
Chromosome: chr07 Position: 4802344 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 84.08% | 15.92% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 487 | 58.32% | 41.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 325 | 46.46% | 53.54% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704802344 | T->C | INTERGENIC | None |