Detailed information of SNP:
|
SNP ID:
sf0704857081(Gbrowse)
Chromosome: chr07 Position: 4857081 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 95.56% | 4.44% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 489 | 94.27% | 5.73% |
| Aus | 54 | 74.07% | 25.93% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 88 | 77.27% | 22.73% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704857081 | C->A | INTERGENIC | None |