Detailed information of SNP:
|
SNP ID:
sf0704863946(Gbrowse)
Chromosome: chr07 Position: 4863946 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 95.47% | 4.53% |
| All Indica | 792 | 93.18% | 6.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704863946 | A->T | INTERGENIC | None |