Detailed information of SNP:
|
SNP ID:
sf0704870364(Gbrowse)
Chromosome: chr07 Position: 4870364 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 95.84% | 4.16% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0704870364 | C->G | LOC_Os07g09300(LOC_Os07g09300.1) | Non-Synonymous SNP |