Detailed information of SNP:
|
SNP ID:
sf0705034473(Gbrowse)
Chromosome: chr07 Position: 5034473 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1136 | 85.12% | 14.88% |
| All Indica | 659 | 74.81% | 25.19% |
| All Japonica | 418 | 99.76% | 0.24% |
| Aus | 12 | 91.67% | 8.33% |
| Indica I | 311 | 94.21% | 5.79% |
| Indica II | 172 | 47.67% | 52.33% |
| Indica Intermediate | 176 | 67.05% | 32.95% |
| Temperate Japonica | 276 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705034473 | C->T | INTERGENIC | None |