Detailed information of SNP:
|
SNP ID:
sf0705055077(Gbrowse)
Chromosome: chr07 Position: 5055077 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 90.68% | 9.32% |
| All Indica | 797 | 91.34% | 8.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705055077 | T->C | LOC_Os07g09550(LOC_Os07g09550.1) | INTRON |