Detailed information of SNP:
|
SNP ID:
sf0705086106(Gbrowse)
Chromosome: chr07 Position: 5086106 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.22% | 7.78% |
| All Indica | 795 | 93.84% | 6.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705086106 | C->T | INTERGENIC | None |