Detailed information of SNP:
|
SNP ID:
sf0705160093(Gbrowse)
Chromosome: chr07 Position: 5160093 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 88.94% | 11.06% |
| All Indica | 775 | 88.52% | 11.48% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 362 | 88.67% | 11.33% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 203 | 83.74% | 16.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705160093 | T->C | INTERGENIC | None |