Detailed information of SNP:
|
SNP ID:
sf0705167220(Gbrowse)
Chromosome: chr07 Position: 5167220 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 52.42% | 47.58% |
| All Indica | 773 | 21.73% | 78.27% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 42 | 40.48% | 59.52% |
| Indica I | 363 | 15.98% | 84.02% |
| Indica II | 208 | 21.63% | 78.37% |
| Indica Intermediate | 202 | 32.18% | 67.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705167220 | C->T | INTERGENIC | None |