Detailed information of SNP:
|
SNP ID:
sf0705189030(Gbrowse)
Chromosome: chr07 Position: 5189030 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 50.39% | 49.61% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705189030 | T->C | LOC_Os07g09740(LOC_Os07g09740.1) | Synonymous |