Detailed information of SNP:
|
SNP ID:
sf0705190403(Gbrowse)
Chromosome: chr07 Position: 5190403 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 59.16% | 40.84% |
| All Indica | 797 | 90.09% | 9.91% |
| All Japonica | 466 | 3.43% | 96.57% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 315 | 4.44% | 95.56% |
| Tropical Japonica | 87 | 1.15% | 98.85% |
| Japonica Intermediate | 64 | 1.56% | 98.44% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705190403 | C->T | LOC_Os07g09740(LOC_Os07g09740.1) | Non-Synonymous SNP |