Detailed information of SNP:
|
SNP ID:
sf0705218292(Gbrowse)
Chromosome: chr07 Position: 5218292 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.04% | 49.96% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705218292 | C->T | INTERGENIC | None |