Detailed information of SNP:
|
SNP ID:
sf0705224778(Gbrowse)
Chromosome: chr07 Position: 5224778 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 58.83% | 41.17% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705224778 | C->T | LOC_Os07g09814(LOC_Os07g09814.2) | INTRON |
| sf0705224778 | C->T | LOC_Os07g09814(LOC_Os07g09814.1) | INTRON |