Detailed information of SNP:
|
SNP ID:
sf0705225229(Gbrowse)
Chromosome: chr07 Position: 5225229 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 53.75% | 46.25% |
| All Indica | 794 | 91.69% | 8.31% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705225229 | G->A | LOC_Os07g09814(LOC_Os07g09814.2) | INTRON |
| sf0705225229 | G->A | LOC_Os07g09814(LOC_Os07g09814.1) | INTRON |