Detailed information of SNP:
|
SNP ID:
sf0705232182(Gbrowse)
Chromosome: chr07 Position: 5232182 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.21% | 43.79% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705232182 | C->T | LOC_Os07g09840(LOC_Os07g09840.1) | Synonymous |