Detailed information of SNP:
|
SNP ID:
sf0705294922(Gbrowse)
Chromosome: chr07 Position: 5294922 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 96.05% | 3.95% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705294922 | A->G | INTERGENIC | None |