Detailed information of SNP:
|
SNP ID:
sf0705305491(Gbrowse)
Chromosome: chr07 Position: 5305491 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 63.17% | 36.83% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 465 | 2.80% | 97.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 315 | 2.22% | 97.78% |
| Tropical Japonica | 84 | 5.95% | 94.05% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0705305491 | G->A | INTERGENIC | None |